Please see the Pathway Tools Overview documentįor more details on the capabilities of the software. Pathway/Genome Editors: Provide interactive editing capabilities for PGDBs.MetaFlux: Supports development and execution of metabolic flux models.The Navigator powers the BioCyc web site at. Pathway/Genome Navigator: Supports query, visualization, and analysis of PGDBs.Of an organism, given a Genbank entry as input. PathoLogic: Creates a new Pathway/Genome Database (PGDB) containing the predicted metabolic pathways.Identify choke points (potential drug targets) in metabolic networks.Search for routes between specified metabolites.Comparative genome and pathway analyses.Analysis of gene-expression and metabolomics datasets, including pathwayĪnalysis and painting omics data onto diagrams of the full metabolic network, full regulatory network,.Display of operons, regulons, and full transcriptional regulatory networks.Automatic display of metabolic pathways and full metabolic networks.Scientific visualization and web publishing of those.Metabolic reconstruction and metabolic-flux modeling using flux-balance analysis.Development of organism-specific databasesīioinformatics datatypes, including genomes, metabolic pathways,.System that is associated with the BioCyc database collectionĪnd supports several use cases in bioinformatics: Pathway Tools is a comprehensive systems-biology software Pathway Tools Software Pathway Tools Bioinformatics Software Licensing Academic Licenses Commercial Licenses Information Pathway Tools Overview Pathway Tools Testimonials
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